Package: gtexr 0.1.0.9000
Alasdair Warwick
gtexr: Query the GTEx Portal API
A convenient R interface to the Genotype-Tissue Expression (GTEx) Portal API. For more information on the API, see <https://gtexportal.org/api/v2/redoc>.
Authors:
gtexr_0.1.0.9000.tar.gz
gtexr_0.1.0.9000.zip(r-4.5)gtexr_0.1.0.9000.zip(r-4.4)gtexr_0.1.0.9000.zip(r-4.3)
gtexr_0.1.0.9000.tgz(r-4.4-any)gtexr_0.1.0.9000.tgz(r-4.3-any)
gtexr_0.1.0.9000.tar.gz(r-4.5-noble)gtexr_0.1.0.9000.tar.gz(r-4.4-noble)
gtexr_0.1.0.9000.tgz(r-4.4-emscripten)gtexr_0.1.0.9000.tgz(r-4.3-emscripten)
gtexr.pdf |gtexr.html✨
gtexr/json (API)
NEWS
| # Install 'gtexr' in R: |
| install.packages('gtexr', repos = c('https://rmgpanw.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rmgpanw/gtexr/issues
api-wrapperbioinformaticseqtlgtexsqtl
Last updated 15 days agofrom:44fdac5911. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 23 2024 |
| R-4.5-win | OK | Sep 23 2024 |
| R-4.5-linux | OK | Sep 23 2024 |
| R-4.4-win | OK | Sep 23 2024 |
| R-4.4-mac | OK | Sep 23 2024 |
| R-4.3-win | OK | Sep 23 2024 |
| R-4.3-mac | OK | Sep 23 2024 |
Exports:calculate_expression_quantitative_trait_locicalculate_ieqtlscalculate_isqtlscalculate_splicing_quantitative_trait_locidownloadget_annotationget_clustered_median_exon_expressionget_clustered_median_gene_expressionget_clustered_median_junction_expressionget_clustered_median_transcript_expressionget_collapsed_gene_model_exonget_dataset_infoget_downloads_page_dataget_eqtl_genesget_exonsget_expression_pcaget_file_listget_fine_mappingget_full_get_collapsed_gene_model_exonget_functional_annotationget_gene_expressionget_gene_searchget_genesget_genomic_featuresget_gwas_catalog_by_locationget_imageget_independent_eqtlget_linkage_disequilibrium_by_variant_dataget_linkage_disequilibrium_dataget_maintenance_messageget_median_exon_expressionget_median_gene_expressionget_median_junction_expressionget_median_transcript_expressionget_multi_tissue_eqtlsget_neighbor_geneget_news_itemget_sample_biobank_dataget_sample_datasets_endpointsget_service_infoget_significant_single_tissue_eqtlsget_significant_single_tissue_eqtls_by_locationget_significant_single_tissue_ieqtlsget_significant_single_tissue_isqtlsget_significant_single_tissue_sqtlsget_single_nucleus_gexget_single_nucleus_gex_summaryget_sqtl_genesget_subjectget_tissue_site_detailget_top_expressed_genesget_transcriptsget_variantget_variant_by_location
Dependencies:askpassclicpp11curldplyrfansigenericsgluehttr2lifecyclemagrittropensslpillarpkgconfigpurrrR6rappdirsrlangstringistringrsystibbletidyrtidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calculate Expression Quantitative Trait Loci | calculate_expression_quantitative_trait_loci |
| Calculate Ieqtls | calculate_ieqtls |
| Calculate Isqtls | calculate_isqtls |
| Calculate Splicing Quantitative Trait Loci | calculate_splicing_quantitative_trait_loci |
| Download | download |
| Get Annotation | get_annotation |
| Get Clustered Median Exon Expression | get_clustered_median_exon_expression |
| Get Clustered Median Gene Expression | get_clustered_median_gene_expression |
| Get Clustered Median Junction Expression | get_clustered_median_junction_expression |
| Get Clustered Median Transcript Expression | get_clustered_median_transcript_expression |
| Get Collapsed Gene Model Exon | get_collapsed_gene_model_exon |
| Get Dataset Info | get_dataset_info |
| Get Downloads Page Data | get_downloads_page_data |
| Get Eqtl Genes | get_eqtl_genes |
| Get Exons | get_exons |
| Get Expression Pca | get_expression_pca |
| Get File List | get_file_list |
| Get Fine Mapping | get_fine_mapping |
| Get Full Get Collapsed Gene Model Exon | get_full_get_collapsed_gene_model_exon |
| Get Functional Annotation | get_functional_annotation |
| Get Gene Expression | get_gene_expression |
| Get Gene Search | get_gene_search |
| Get Genes | get_genes |
| Get Genomic Features | get_genomic_features |
| Get Gwas Catalog By Location | get_gwas_catalog_by_location |
| Get Image | get_image |
| Get Independent Eqtl | get_independent_eqtl |
| Get Linkage Disequilibrium By Variant Data | get_linkage_disequilibrium_by_variant_data |
| Get Linkage Disequilibrium Data | get_linkage_disequilibrium_data |
| Get Maintenance Message | get_maintenance_message |
| Get Median Exon Expression | get_median_exon_expression |
| Get Median Gene Expression | get_median_gene_expression |
| Get Median Junction Expression | get_median_junction_expression |
| Get Median Transcript Expression | get_median_transcript_expression |
| Get Multi Tissue Eqtls | get_multi_tissue_eqtls |
| Get Neighbor Gene | get_neighbor_gene |
| Get News Item | get_news_item |
| Get Sample (Biobank Data) | get_sample_biobank_data |
| Get Sample (Datasets Endpoints) | get_sample_datasets_endpoints |
| Get Service Info | get_service_info |
| Get Significant Single Tissue Eqtls | get_significant_single_tissue_eqtls |
| Get Significant Single Tissue eQTLs By Location | get_significant_single_tissue_eqtls_by_location |
| Get Significant Single Tissue Ieqtls | get_significant_single_tissue_ieqtls |
| et Significant Single Tissue Isqtls | get_significant_single_tissue_isqtls |
| Get Significant Single Tissue Sqtls | get_significant_single_tissue_sqtls |
| Get Single Nucleux Gex | get_single_nucleus_gex |
| Get Single Nucleus Gex Summary | get_single_nucleus_gex_summary |
| Get Sqtl Genes | get_sqtl_genes |
| Get Subject | get_subject |
| Get Tissue Site Detail | get_tissue_site_detail |
| Get Top Expressed Genes | get_top_expressed_genes |
| Get Transcripts | get_transcripts |
| Get Variant | get_variant |
| Get Variant By Location | get_variant_by_location |